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If you are using TopScore, please cite:
Mulnaes, D., & Gohlke, H. (2018). TopScore: Using Deep Neural Networks and Large Diverse Data Sets for Accurate Protein Model Quality Assessment. Journal of chemical theory and computation, 14(11), 6117-6126. [PDF]

If you are using the Server, please also cite:
Mulnaes, D., Koenig, F., Gohlke, H.
TopSuite webserver: A meta-suite for deep learning-based protein structure and quality prediction.
J. Chem. Inf. Model. 2021, DOI: 10.1021/acs.jcim.0c01202

Rose, A. S., Bradley, A. R., Valasatava, Y., Duarte, J. M., Prlić, A., & Rose, P. W. (2016, July). Web-based molecular graphics for large complexes. In Proceedings of the 21st international conference on Web3D technology (pp. 185-186). ACM.

Rose, A. S., & Hildebrand, P. W. (2015). NGL Viewer: a web application for molecular visualization. Nucleic acids research, 43(W1), W576-W579.